McCartney HPC Cluster — Castro Lab / CEI, Universidad de Talca

McCartney SLURM Script Generator

Last updated on 1 min read

An interactive Shiny app that generates ready-to-submit SLURM batch scripts for the McCartney HPC cluster without having to remember syntax or look up documentation.

Launch Script Generator →

What it does

  • Select partition (basic or gpu), CPUs, RAM, and wall-clock time
  • Toggle job arrays — paste your sample names and the app writes the SAMPLES=(...) bash array automatically
  • Toggle scratch filesystem — the app wraps your command with copy-in / run / copy-back logic and a trap cleanup EXIT so scratch is always removed
  • Search and load any installed software module
  • Copy the finished script to the clipboard or download it as a .sh file

How to use

  1. Click Launch Script Generator above
  2. Fill in the sidebar — the script updates live in the right panel
  3. Hit Download .sh and submit with sbatch your_script.sh

For the full cluster user guide (SSH, file transfer, module system, script templates) see the McCartney HPC User Guide.

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